MicroRNA-145 Targets YES and STAT1 in Colon Cancer Cells

BACKGROUND: MicroRNAs (miRNAs) have emerged as important gene regulators and are recognized as key players in tumorigenesis. miR-145 is reported to be down-regulated in several cancers, but knowledge of its targets in colon cancer remains limited. METHODOLOGY/PRINCIPAL FINDINGS: To investigate the role of miR-145 in colon cancer, we have employed a microarray based approach to identify miR-145 targets. Based on seed site enrichment analyses and unbiased word analyses, we found a significant enrichment of miRNA binding sites in the 3'-untranslated regions (UTRs) of transcripts down-regulated upon miRNA overexpression. Gene Ontology analysis showed an overrepresentation of genes involved in cell death, cellular growth and proliferation, cell cycle, gene expression and cancer. A number of the identified miRNA targets have previously been implicated in cancer, including YES, FSCN1, ADAM17, BIRC2, VANGL1 as well as the transcription factor STAT1. Both YES and STAT1 were verified as direct miR-145 targets. CONCLUSIONS/SIGNIFICANCE: The study identifies and validates new cancer-relevant direct targets of miR-145 in colon cancer cells and hereby adds important mechanistic understanding of the tumor-suppressive functions of miR-145

microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-κB by targeting CARD10 and COPS8 in gastric cancer

BACKGROUND: Gastric cancer is the second most common cause of cancer-related death in the world. Inflammatory signals originating from gastric cancer cells are important for recruiting inflammatory cells and regulation of metastasis of gastric cancer. Several microRNAs (miRNA) have been shown to be involved in development and progression of gastric cancer. miRNA-146a (miR-146a) is a modulator of inflammatory signals, but little is known about its importance in gastric cancer. We therefore wanted to identify targets of miR-146a in gastric cancer and examine its biological roles. RESULTS: The expression of miR-146a was evaluated by quantitative PCR (qPCR) and found up-regulated in the gastrin knockout mice, a mouse model of gastric cancer, and in 73% of investigated human gastric adenocarcinomas. Expression of miR-146a by gastric cancer cells was confirmed by in situ hybridization. Global analysis of changes in mRNA levels after miR-146a transfection identified two transcripts, caspase recruitment domain-containing protein 10 (CARD10) and COP9 signalosome complex subunit 8 (COPS8), as new miR-146a targets. qPCR, Western blotting and luciferase assays confirmed these transcripts as direct miR-146a targets. CARD10 and COPS8 were shown to be part of the G protein-coupled receptor (GPCR) pathway of nuclear factor-kappaB (NF-kappaB) activation. Lysophosphatidic acid (LPA) induces NF-kappaB activation via this pathway and over-expression of miR-146a inhibited LPA-induced NF-kappaB activation, reduced LPA-induced expression of tumor-promoting cytokines and growth factors and inhibited monocyte attraction. CONCLUSIONS: miR-146a expression is up-regulated in a majority of gastric cancers where it targets CARD10 and COPS8, inhibiting GPCR-mediated activation of NF-kappaB, thus reducing expression of NF-kappaB-regulated tumor-promoting cytokines and growth factors. By targeting components of several NF-kappaB-activating pathways, miR-146a is a key component in the regulation of NF-kappaB activity

Alleviation of Murine Leukemia Virus Repression in Embryonic Carcinoma Cells by Genetically Engineered Primer Binding Sites and Artificial tRNA Primers

AbstractThe primer binding site (PBS) plays pivotal roles during reverse transcription of retroviruses and also is the target of a cellular host defense impeding the transcription of murine leukemia virus (MLV) harboring a proline (pro) PBS in embryonic cells. Both the PBS and the tRNA primer are copied during reverse transcription and anneal as complementary DNA sequences creating the PBS of the integrated provirus. The pro PBS of MLV can be exchanged by PBS sequences matching endogenous or engineered tRNAs to allow replication of Akv MLV-derived vectors in fibroblasts. Here we use the PBS escape mutant B2 to demonstrate the capacity of the synthetic tRNAB2 to function in reverse transcription in competition with endogenous tRNAs in fibroblasts and embryonic carcinoma (EC) cells. We further show symmetry between PBS and the primer by the ability of the synthetic tRNAB2 to confer escape from EC repression of a PBS-Pro vector. Of a panel of vectors with the repressed pro PBS substituted for other natural or artificial PBS sequences, all except one efficiently expressed the neo marker gene when transferred to NIH/3T3 and EC cells, hence avoiding PBS-mediated silencing in EC cells. A non-natural PBS matching an artificially designed tRNA molecule conferred no further relief from repression than that attained with the B2 escape mutant or the natural alternative PBSs. Interestingly, a vector harboring a PBS matching tRNALys1.2 suffered repression similar to the wild-type PBS-Pro but was partially rescued by a single point mutation of the PBS

miR-449 inhibits cell proliferation and is down-regulated in gastric cancer

<p>Abstract</p> <p>Background</p> <p>Gastric cancer is the fourth most common cancer in the world and the second most prevalent cause of cancer related death. The development of gastric cancer is mainly associated with <it>H. Pylori </it>infection leading to a focus in pathology studies on bacterial and environmental factors, and to a lesser extent on the mechanistic development of the tumour. MicroRNAs are small non-coding RNA molecules involved in post-transcriptional gene regulation. They are found to regulate genes involved in diverse biological functions and alterations in microRNA expression have been linked to the pathogenesis of many malignancies. The current study is focused on identifying microRNAs involved in gastric carcinogenesis and to explore their mechanistic relevance by characterizing their targets.</p> <p>Results</p> <p>Invitrogen NCode miRNA microarrays identified miR-449 to be decreased in 1-year-old <it>Gastrin </it>KO mice and in <it>H. Pylori </it>infected gastric tissues compared to tissues from wild type animals. Growth rate of gastric cell lines over-expressing miR-449 was inhibited by 60% compared to controls. FACS cell cycle analysis of miR-449 over-expressing cells showed a significant increase in the sub-G₁fraction indicative of apoptosis. ß-Gal assays indicated a senescent phenotype of gastric cell lines over-expressing miR-449. Affymetrix 133v2 arrays identified <it>GMNN</it>, <it>MET, CCNE2, SIRT1 </it>and <it>CDK6 </it>as miR-449 targets. Luciferase assays were used to confirm <it>GMNN</it>, <it>MET</it>, <it>CCNE2 </it>and <it>SIRT1 </it>as direct targets. We also show that miR-449 over-expression activated p53 and its downstream target p21 as well as the apoptosis markers cleaved CASP3 and PARP. Importantly, qPCR analyses showed a loss of miR-449 expression in human clinical gastric tumours compared to normal tissues.</p> <p>Conclusions</p> <p>In this study, we document a diminished expression of miR-449 in <it>Gastrin </it>KO mice and further confirmed its loss in human gastric tumours. We investigated the function of miR-449 by identifying its direct targets. Furthermore we show that miR-449 induces senescence and apoptosis by activating the p53 pathway.</p

The social gradient in stress and depressive symptoms among adolescent girls: A systematic review and narrative synthesis

Aim: Socioeconomic inequality is found to negatively influence mental health, but studies investigating the relationship between socioeconomic status (SES) and specific common mental health problems such as stress and depressive symptoms in the general adolescent population are needed. Moreover, gender gaps in mental health among adolescents are evident, but there is a lack of studies that investigate socioeconomic differences in mental health within genders. As girls report consistently more depressive symptoms than do boys, this systematic review specifically investigates whether socioeconomic status is associated with stress and depressive symptoms among adolescent girls in the general population. Methods: Eligible studies according to predefined inclusion criteria were identified from Medline, PsycINFO, ISI Web of Science, Svemed+ and Idunn. Eight studies were identified, whereby only two measured stress; hence, the evidence base for stress was too limited to perform an analysis. A narrative synthesis was conducted of the six studies that measured depressive symptoms. Results: A significant inverse social gradient in depressive symptoms among adolescent girls was revealed in all studies that applied parental employment status and perceived financial difficulties as SES measures, while parental educational level and Family Affluence Scale (FAS) gave inconsistent results. The relatively low number of studies may limit interpretation. Conclusions: Depressive symptoms were more common among adolescent girls with low SES compared to girls with higher SES. SES measures should be applied with care in studies of populations of adolescent girls, as the results can vary based on the chosen indicator. Actions to reduce depressive symptoms among adolescent girls in the general population should include targeting socioeconomic inequalities

Cityringen, trafikale analyser

I tillæg til de to første metrolinjer i København, der blev åbnet fra 2002-2007, har ejerne Staten og København og Frederiksberg kommuner igangsat Metroselskabet med projekteringen af yderligere en metroring i København kaldet ”Cityringen” (se figur 1 nedenfor). Cityringen er en ca. 16 kilometer lang underjordisk fuldautomatisk metroring med 17 undergrunds- stationer. En tur rundt i Cityringen forventes at tage ca. 24 minutter, men den længste rejse mellem to destinationer vil ikke tage mere end 12 minutter under normale driftsforhold. På Cityringen skal køre to linjer: M3, som bliver en ringlinie, der passerer alle ringens standsningssteder og M4, som bliver en pendullinje, der betjener stationerne mellem København H, Østerport og Nørrebro. Cityringen bliver desuden forberedt for udvidelser mod Sydhavn og Brønshøj. I myldretiderne skal Cityringen på strækningen mellem København H, Østerport og Nørrebro afvikle op til 36 tog i timen. På den øvrige del af Cityringen bliver betjeningsfrekvensen det halve. I et højfrekvent undergrundssystem som Cityringen, vil det være ekstremt dyrt og nærmest umuligt at ændre infrastrukturen efter åbning. Derfor er det vigtigt på forhånd at kunne dokumentere, at den nye infrastruktur vil være i stand til afvikle den planlagte trafik

miRConnect: Identifying Effector Genes of miRNAs and miRNA Families in Cancer Cells

micro(mi)RNAs are small non-coding RNAs that negatively regulate expression of most mRNAs. They are powerful regulators of various differentiation stages, and the expression of genes that either negatively or positively correlate with expressed miRNAs is expected to hold information on the biological state of the cell and, hence, of the function of the expressed miRNAs. We have compared the large amount of available gene array data on the steady state system of the NCI60 cell lines to two different data sets containing information on the expression of 583 individual miRNAs. In addition, we have generated custom data sets containing expression information of 54 miRNA families sharing the same seed match. We have developed a novel strategy for correlating miRNAs with individual genes based on a summed Pearson Correlation Coefficient (sPCC) that mimics an in silico titration experiment. By focusing on the genes that correlate with the expression of miRNAs without necessarily being direct targets of miRNAs, we have clustered miRNAs into different functional groups. This has resulted in the identification of three novel miRNAs that are linked to the epithelial-to-mesenchymal transition (EMT) in addition to the known EMT regulators of the miR-200 miRNA family. In addition, an analysis of gene signatures associated with EMT, c-MYC activity, and ribosomal protein gene expression allowed us to assign different activities to each of the functional clusters of miRNAs. All correlation data are available via a web interface that allows investigators to identify genes whose expression correlates with the expression of single miRNAs or entire miRNA families. miRConnect.org will aid in identifying pathways regulated by miRNAs without requiring specific knowledge of miRNA targets